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1

Employing Molecular Phylodynamic Methods to Identify and Forecast HIV Transmission Clusters in Public Health Settings: A Qualitative Study

Rich, Shannan N., Richards, Veronica L., Mavian, Carla N., Switzer, William M., Rife Magalis, Brittany, Poschman, Karalee, Geary, Shana, Broadway, Steven E., Bennett, Spencer B., Blanton, Jason, Leitn

Journal:

Year:

2020

File:

PDF, 3.02 MB

2020

2

Structural study of interaction between brinzolamide and dorzolamide inhibition of human carbonic anhydrases

Pinard, Melissa A., Boone, Christopher D., Rife, Brittany D., Supuran, Claudiu T., McKenna, Robert

Journal:

Bioorganic & Medicinal Chemistry

Year:

2013

Language:

english

File:

PDF, 964 KB

english, 2013

3

Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element

Rollins, Carrie, Levengood, Jeffrey D., Rife, Brittany D., Salemi, Marco, Tolbert, Blanton S.

Journal:

Year:

2014

Language:

english

File:

PDF, 5.91 MB

english, 2014

4

On the early dynamics and spread of HIV-1

Rife, Brittany, Salemi, Marco

Journal:

Trends in Microbiology

Year:

2015

Language:

english

File:

PDF, 242 KB

english, 2015

5

Impact of spatial dispersion, evolution, and selection on Ebola Zaire Virus epidemic waves

Azarian, Taj, Lo Presti, Alessandra, Giovanetti, Marta, Cella, Eleonora, Rife, Brittany, Lai, Alessia, Zehender, Gianguglielmo, Ciccozzi, Massimo, Salemi, Marco

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 687 KB

english, 2015

6

Tracking the Emergence of Host-Specific Simian Immunodeficiency Virus env and nef Populations Reveals nef Early Adaptation and Convergent Evolution in Brain of Naturally Progressing Rhesus Macaques

Lamers, Susanna L., Nolan, David J., Rife, Brittany D., Fogel, Gary B., McGrath, Michael S., Burdo, Tricia H., Autissier, Patrick, Williams, Kenneth C., Goodenow, Maureen M., Salemi, Marco, Kirchhoff,

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 2.91 MB

english, 2015

7

Solution Structure of the HIV-1 Intron Splicing Silencer and its Interactions with the UP1 Domain of hnRNP A1

Jain, Niyati, Morgan, Christopher E., Rife, Brittany D., Salemi, Marco, Tolbert, Blanton S.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 3.63 MB

english, 2015

8

Evolution of Neuroadaptation in the Periphery and Purifying Selection in the Brain Contribute to Compartmentalization of Simian Immunodeficiency Virus (SIV) in the Brains of Rhesus Macaques with SIV-Associated Encephalitis

Rife, Brittany D., Nolan, David J., Lamers, Susanna L., Autissier, Patrick, Burdo, Tricia, Williams, Kenneth C., Salemi, Marco, Kirchhoff, F.

Journal:

Journal of Virology

Year:

2016

Language:

english

File:

PDF, 4.82 MB

english, 2016

9

Phylodynamic applications in 21stcentury global infectious disease research

Brittany D Rife,Carla Mavian,Xinguang Chen…

Journal:

Global Health Research and Policy

Year:

2017

Language:

english

File:

PDF, 714 KB

english, 2017

10

Neutral theory and rapidly evolving viral pathogens

Frost, Simon D W, Magalis, Brittany Rife, Kosakovsky Pond, Sergei L

Journal:

Molecular Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 346 KB

english, 2018

11

Identification of conserved, primary sequence motifs that direct retrovirus RNA fate

Singh, Gatikrushna, Rife, Brittany D, Seufzer, Bradley, Salemi, Marco, Rendahl, Aaron, Boris-Lawrie, Kathleen

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 3.57 MB

english, 2018

12

Evaluation of global HIV/SIV envelope gp120 RNA structure and evolution within and among infected hosts

Rife Magalis, Brittany, Kosakovsky Pond, Sergei L, Summers, Michael F, Salemi, Marco

Journal:

Virus Evolution

Year:

2018

Language:

english

File:

PDF, 1.55 MB

english, 2018

13

Phylogenetics and Phyloanatomy of HIV/SIV Intra-Host Compartments and Reservoirs: The Key Role of the Central Nervous System

Salemi, Marco, Rife, Brittany

Journal:

Current HIV Research

Year:

2016

Language:

english

File:

PDF, 1019 KB

english, 2016

14

Origin and Dissemination of Hepatitis B Virus Genotype C in East Asia Revealed by Phylodynamic Analysis and Historical Correlates

Lin, Serena Y.C., Magalis, Brittany Rife, Salemi, Marco, Liu, Hsin-Fu

Journal:

Journal of Viral Hepatitis

Year:

2018

Language:

english

File:

PDF, 876 KB

english, 2018

15

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Mavian, Carla, Pond, Sergei Kosakovsky, Marini, Simone, Magalis, Brittany Rife, Vandamme, Anne-Mieke, Dellicour, Simon, Scarpino, Samuel V., Houldcroft, Charlotte, Villabona-Arenas, Julian, Paisie, Ta

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 504 KB

2020

16

Contrast-FEL â a test for differences in selective pressures at individual sites among clades and sets of branches

Kosakovsky Pond, Sergei L, Wisotsky, Sadie R, Escalante, Ananias, Magalis, Brittany Rife, Weaver, Steven, Crandall, Keith

Journal:

Molecular Biology and Evolution

Year:

2020

File:

PDF, 3.03 MB

2020

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